smryMCMC: Summarize the posterior distribution

In ccshao/maIHB: Inference the Maternal Allele Inheritance via Bayesian Approach

Summarize the posterior distribution

Description

Summarize the posterior distribution for HapBias, kappa and other parameters. The posterior distributs will be saved into a pdf file under current folder.

Usage

smryMCMC(codaSamples, indiffZone = c(0.49, 0.51), credMass = 0.95,
  usexlim = FALSE, xlimLow = 0.4, xlimHigh = 0.6, saveCSV = TRUE,
  saveName = "HieraraBayesian")

Arguments

codaSamples	output from BernHierModel
indiffZone	limits of indiffZone
credMass	probility mass for highest density interval (HDI)
usexlim	manually set the xlim of histogram?
xlimLow	low end of xlim
xlimHigh	high end of xlim
saveCSV	save the results as a csv file?
saveName	prefix for the saved pdf file and csv file

Value

put the histograms from the posterior distributions into a pdf file and return a data.frame contain the summary info

Note

Scripts have been modified from "Doing Bayesian Data Analysis (2nd)" by John K. Kruschke.

Examples

byesRes.A <- BernHierModel(F1.TypeA[, -1], saveName = "Family1.TypeA")
summaryRes.A <- smryMCMC(byesRes.A, saveName = "Family1.TypeA")

ccshao/maIHB documentation built on July 9, 2022, 3:48 p.m.