Man pages for cdiener/tcgar
A small helper package for using data from the Genomic Data Commons
| gdc_files | File infos for the GDC release 9.0 from 11-2017 |
| genemap | Gene annotations obatined from BioMart. |
| get_data | Downloads data from the Genomic Data Commons Portal. |
| list_files | Obtains infromation about the files in GDC. |
| panel_samples | Counts samples per panel across several data sets. |
| read_clinical | Reads clinical data from TCGA for multiple samples. |
| read_huex | Reads HuEx 1.0 st v2 exon expression data. |
| read_rnaseq | Reads Level 3 RNA sequencing data from GDC. |
| read_rnaseq_legacy | Reads RNA sequencing data from the GDC legacy archive. |
