gdc_files: File infos for the GDC release 9.0 from 11-2017

In cdiener/tcgar: A small helper package for using data from the Genomic Data Commons

Description

This data set contains detailed information about all files in the GDC release that have a corresponding read method in 'tcgar'. This data set was generated by the list_files function contained in this package and filtering for the data types "Gene Expression Quantification" and "Clinical Supplement".

Usage

gdc_files

Format

A data frame with the following columns.

data_type

The type of the file.

updated_datetime

Last update of the file.

file_name

The filename of the file.

md5sum

md5 hash for the file.

id

Internal GDC id for the data. Ususally the same as 'file_id'.

file_id

The GDC UUID for the file.

project

The project the sample came from.

panel

The panel the sample came from.

data_category

Category for the file.

experimental_strategy

Type of experiment used to obtain the data.

sample_uuid

Unique ID for the sample the data came from.

sample_barcode

Barcode for the sample the data came from.

patient_uuid

Unique ID for the patient the data came from.

patient_barcode

Barcode for the patient the data came from.

tumor

Whether the file describes a tumor sample (normal sample otherwise).

cdiener/tcgar documentation built on May 13, 2019, 2:41 p.m.