Description Usage Arguments Value See Also Examples
This reads level 3 data for exon expression data.
1 |
manifest |
Path to the GDC file manifest. |
folder |
Location of the directory containing downloaded TCGA data. |
features |
Which features to use. Can be either "genes" or "exons". |
progress |
Whether to show progress information. |
A list with three elements, a matrix of log-expression values, a data table giving additional information for samples and a data table describing the features (genes or exon IDs).
read_rnaseq
to read RNASeq data.
1 2 3 4 | # Not run due to large download...
# gbm <- system.file("extdata", "manifest.tsv", package = "tcgar")
# d <- tempdir()
# huex <- read_huex(gbm, d)
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