Files in cdmuir/photosynthesis
Tools for Plant Ecophysiology & Modeling

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/rhub.yaml
.gitignore
CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/FvCB.R R/analyze_sensitivity.R R/aq_response.R R/bake-par.R R/bake.R R/calculated-parameters.R R/compile_data.R R/compute_sensitivity.R R/conductance.R R/constants.R R/data.R R/enviro-par.R R/fit_PV_curve.R R/fit_aci_response.R R/fit_aq_response.R R/fit_g_mc_variableJ.R R/fit_gs_model.R R/fit_hyrda_vuln_curve.R R/fit_many.R R/fit_photosynthesis.R R/fit_r_light.R R/fit_t_response.R R/gs_models.R R/j_calculations.R R/leaf-par.R R/make_parameters.R R/models.R R/parameter_names.R R/photosynthesis-package.R R/photosynthesis.R R/print_graphs.R R/read_licor.R R/simulate_error.R R/t_functions.R R/utils.R README.Rmd README.md
_pkgdown.yml
cran-comments.md data-raw/li6800_example.R data-raw/photo-2d-parameters.R data-raw/photo-parameters.R
data/photo_parameters.rda
docs/404.html
docs/CONDUCT.html
docs/LICENSE-text.html
docs/LICENSE.html
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docs/articles/co2-response.html
docs/articles/co2-response_files/figure-html/unnamed-chunk-1-1.png
docs/articles/co2-response_files/figure-html/unnamed-chunk-1-2.png
docs/articles/hydraulic-vulnerability.html
docs/articles/index.html
docs/articles/light-respiration.html
docs/articles/light-response.html
docs/articles/light-response_files/figure-html/unnamed-chunk-2-1.png
docs/articles/light-response_files/figure-html/unnamed-chunk-6-1.png
docs/articles/light-response_files/figure-html/unnamed-chunk-7-1.png
docs/articles/light-response_files/figure-html/unnamed-chunk-7-2.png
docs/articles/mesophyll-conductance.html
docs/articles/modeling-recommendations.html
docs/articles/photosynthesis-introduction.html
docs/articles/pressure-volume.html
docs/articles/sensitivity-analysis.html
docs/articles/stomatal-conductance.html
docs/articles/temperature-response.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
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docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js
docs/deps/clipboard.js-2.0.11/clipboard.min.js
docs/deps/data-deps.txt
docs/deps/font-awesome-6.5.2/css/all.css
docs/deps/font-awesome-6.5.2/css/all.min.css
docs/deps/font-awesome-6.5.2/css/v4-shims.css
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docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2
docs/deps/headroom-0.11.0/headroom.min.js
docs/deps/headroom-0.11.0/jQuery.headroom.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
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docs/docsearch.js
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docs/favicon.ico
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docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/.get_gbc.html
docs/reference/.get_gmc.html
docs/reference/.get_gsc.html
docs/reference/.get_gtc.html
docs/reference/.get_guc.html
docs/reference/A_demand.html
docs/reference/A_supply.html
docs/reference/CO2_conductance.html
docs/reference/FvCB.html
docs/reference/J.html
docs/reference/W_carbox.html
docs/reference/W_regen.html
docs/reference/W_tpu.html
docs/reference/analyze_sensitivity.html
docs/reference/aq_response.html
docs/reference/bake.html
docs/reference/bake_par.html
docs/reference/baked-class.html
docs/reference/calculate_j.html
docs/reference/calculated-parameters.html
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docs/reference/compile_data.html
docs/reference/compute_sensitivity.html
docs/reference/constants.html
docs/reference/enviro_par.html
docs/reference/figures/logo.png
docs/reference/fit_PV_curve-1.png
docs/reference/fit_PV_curve-2.png
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docs/reference/fit_PV_curve-4.png
docs/reference/fit_PV_curve.html
docs/reference/fit_aci_response-1.png
docs/reference/fit_aci_response-2.png
docs/reference/fit_aci_response.html
docs/reference/fit_aq_response-1.png
docs/reference/fit_aq_response-2.png
docs/reference/fit_aq_response.html
docs/reference/fit_aq_response2.html
docs/reference/fit_g_mc_variableJ-1.png
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docs/reference/fit_g_mc_variableJ.html
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docs/reference/fit_gs_model.html
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docs/reference/fit_hydra_vuln_curve.html
docs/reference/fit_many-1.png
docs/reference/fit_many.html
docs/reference/fit_photosynthesis.html
docs/reference/fit_r_light-1.png
docs/reference/fit_r_light.html
docs/reference/fit_r_light2.html
docs/reference/fit_r_light_WalkerOrt.html
docs/reference/fit_r_light_yin.html
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docs/reference/fit_t_response.html
docs/reference/get_all_models.html
docs/reference/get_f_parameter.html
docs/reference/gs_mod_leuning.html
docs/reference/gs_mod_opti.html
docs/reference/gs_mod_optifull.html
docs/reference/gs_models.html
docs/reference/index.html
docs/reference/j_calculations.html
docs/reference/leaf_par.html
docs/reference/make_bakepar.html
docs/reference/make_constants.html
docs/reference/make_enviropar.html
docs/reference/make_leafpar.html
docs/reference/make_parameters.html
docs/reference/marshall_biscoe_1980.html
docs/reference/models.html
docs/reference/parameter_names.html
docs/reference/photo.html
docs/reference/photo_parameters.html
docs/reference/photoinhibition.html
docs/reference/photosynthesis-package.html
docs/reference/photosynthesis.html
docs/reference/ppm2pa.html
docs/reference/print_graphs-1.png
docs/reference/print_graphs-2.png
docs/reference/print_graphs.html
docs/reference/read_li6800.html
docs/reference/read_licor.html
docs/reference/required_variables.html
docs/reference/simulate_error.html
docs/reference/t_functions.html
docs/reference/t_response_arrhenius_kruse.html
docs/reference/t_response_arrhenius_medlyn.html
docs/reference/t_response_arrhenius_topt.html
docs/reference/t_response_calc_dS.html
docs/reference/t_response_calc_topt.html
docs/reference/t_response_heskel.html
docs/reference/t_response_mmrt.html
docs/reference/temp_resp1.html
docs/reference/temp_resp2.html
docs/search.json
docs/site.webmanifest
docs/sitemap.xml
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docs/web-app-manifest-512x512.png
inst/CITATION
inst/extdata/AQcurve.csv
inst/extdata/A_Ci_Q_data_1.csv
inst/extdata/A_Ci_T_data.csv
inst/extdata/PV_curve.csv
inst/extdata/hydraulic_vulnerability.csv
inst/extdata/li6800_example
inst/extdata/photo-2d-parameters.csv
inst/extdata/photo-parameters.csv
inst/extdata/walkerortdata.csv
man/A_supply.Rd man/CO2_conductance.Rd man/FvCB.Rd man/J.Rd man/analyze_sensitivity.Rd man/aq_response.Rd man/bake.Rd man/bake_par.Rd man/baked-class.Rd man/calculated-parameters.Rd man/compile_data.Rd man/compute_sensitivity.Rd man/constants.Rd man/enviro_par.Rd
man/figures/logo.png
man/fit_PV_curve.Rd man/fit_aci_response.Rd man/fit_aq_response.Rd man/fit_aq_response2.Rd man/fit_g_mc_variableJ.Rd man/fit_gs_model.Rd man/fit_hydra_vuln_curve.Rd man/fit_many.Rd man/fit_photosynthesis.Rd man/fit_r_light.Rd man/fit_r_light2.Rd man/fit_t_response.Rd man/gs_models.Rd man/j_calculations.Rd man/leaf_par.Rd man/make_parameters.Rd man/models.Rd man/parameter_names.Rd man/photo_parameters.Rd man/photosynthesis-package.Rd man/photosynthesis.Rd man/ppm2pa.Rd man/print_graphs.Rd man/read_li6800.Rd man/read_licor.Rd man/required_variables.Rd man/simulate_error.Rd man/t_functions.Rd
photosynthesis.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon-96x96.png
pkgdown/favicon/favicon.ico
pkgdown/favicon/favicon.svg
pkgdown/favicon/site.webmanifest
pkgdown/favicon/web-app-manifest-192x192.png
pkgdown/favicon/web-app-manifest-512x512.png
tests/testthat.R tests/testthat/test-bake.R tests/testthat/test-constants.R tests/testthat/test-enviro-par.R tests/testthat/test-fit_PV_curve.R tests/testthat/test-fit_aci_response.R tests/testthat/test-fit_aq_response2.R tests/testthat/test-fit_g_mc_variableJ.R tests/testthat/test-fit_gs_model.R tests/testthat/test-fit_hydra_vuln_curve.R tests/testthat/test-fit_many.R tests/testthat/test-fit_r_light.R tests/testthat/test-fit_t_response.R tests/testthat/test-leaf-par.R tests/testthat/test-photo-parameters.R tests/testthat/test-photosynthesis-crossing.R tests/testthat/test-read_licor.R tests/testthat/test-unitless.R
vignettes/.gitignore
vignettes/co2-response.Rmd vignettes/hydraulic-vulnerability.Rmd vignettes/light-respiration.Rmd vignettes/light-response.Rmd vignettes/mesophyll-conductance.Rmd vignettes/modeling-recommendations.Rmd vignettes/photosynthesis-introduction.Rmd vignettes/pressure-volume.Rmd vignettes/sensitivity-analysis.Rmd vignettes/stomatal-conductance.Rmd vignettes/temperature-response.Rmd
cdmuir/photosynthesis documentation built on April 11, 2025, 3:28 p.m.