remove_mets: Remove recurring metabolites

In cds-group/MetabolitesGraphs: Extract metabolites-based graphs from metabolic model and gene expression data

Description

This function removes the recurring metabolites to avoid unrealistic connections

Usage

remove_mets(edges_list_w_enzymes, recurring_mets)

Arguments

edges_list	Metabolites edges dataframe, where metabolites columns are named "met1" and "met2"
met_list	vector of recurring metabolites ids

Value

A dataframe with metabolites edges list, without recurring metabolites

Examples

## Not run: 
data(recurring_mets)
edges_list_no_rec_mets <- remove_mets(edges_list_w_enzymes, curr_met)
## End(Not run)

cds-group/MetabolitesGraphs documentation built on Dec. 19, 2021, 2:52 p.m.