getSnps: Get Table of SNPs by Sample
In ceburris/sampleSniffer: Finds Closest Genetic Match Between Samples
Description
Usage
Arguments
Value
Description
This funtion reads a set of VCF files and creates a table of SNPs with SNP IDs as rows and
sample names (one per file) as columns
Usage
1
Arguments
subsetByChromosome
Chromosome number to use for comparison, left NULL if using SNP list
snps
List of SNP IDs to use for comparison
input
Input Directory Containing annotated VCF files
Value
Matrix containing SNP calls for all samples
ceburris/sampleSniffer documentation built on May 14, 2019, 6:09 a.m.
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Description Usage Arguments Value
Description
This funtion reads a set of VCF files and creates a table of SNPs with SNP IDs as rows and sample names (one per file) as columns
Usage
1 |
Arguments
subsetByChromosome |
Chromosome number to use for comparison, left NULL if using SNP list |
snps |
List of SNP IDs to use for comparison |
input |
Input Directory Containing annotated VCF files |
Value
Matrix containing SNP calls for all samples
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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