Description Usage Arguments Value
Reads in all VCF files in input directory, calculates genetic distance between each pair of samples, and finds the closest genetic match for each sample. Either snps file or chromosome number must be specified, but only one can be used at a time. Valid values for chromosome option are numbers 1-23 and X. If output filename is given, value is defaulted to sampleSniffer.pdf.
1 2 | sampleSniffer(input = NULL, snps = NULL, chromosome = NULL,
output = "sampleSniffer")
|
input |
Input directory containing VCF files |
snps |
Name of file containing the SNP IDs to be used |
output |
Name of output file |
chromsome |
Chromosome number to be used |
Matrix containing calculated genetic distance between samples
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