Man pages for cekehe/rappp
QC, data transformation and visualization for PAPP
| align_sequences | Align sequences |
| AminoAcids | Data frame with amino acid names |
| ap_aaindex | Find amino acid indices |
| ap_agresults | Reactivity result plots |
| ap_binary | Binary |
| ap_binary2 | Binary |
| ap_count | Bead count |
| ap_ct | Coupling efficency test |
| ap_cutoffs | Cutoff key |
| ap_cutoffs2 | Cutoff key |
| ap_cutoffs2image | Cutoff key image |
| ap_cutoff_selection | Cutoff selection |
| ap_cutoff_selection2 | Cutoff selection |
| ap_excel | Export data from Autoimmunity Profiling analysis to excel |
| ap_igx | Loading control |
| ap_mads | MAD normalization |
| ap_mads2 | MAD normalization |
| ap_negbeads | Overview of signals in relation to neg control beads |
| ap_norm | Full AP data transformation |
| ap_norm2 | Full AP data transformation |
| ap_overview | Signal overview |
| ap_reactsummary2 | Calculate reactivity frequencies |
| ap_rep | Check replicate samples |
| ap_scoring | Scoring |
| ap_scoring2 | Scoring |
| ap_summary | Analysis summary |
| ap_textplot | Display text information in a graphics plot. |
| bead_count_base | Bead count with ggplot |
| bead_count_ggplot | Bead count with ggplot |
| beeswarm_ggplot | Beeswarm plots for SBA data using ggplot |
| check_peptides | Check peptides |
| cv | Coefficient of Variation |
| layout384 | Print a 384-well plate layout |
| layout96 | Print a 96-well plate layout |
| make_peptides | Make peptides |
| pairs2 | Scatterplot Matrices |
| panel.corSPp | Panel function for pairs-functions |
| panel.corSPpLog | Panel function for pairs-functions |
| tsne_perp | tSNE plots with different perplexities |
