ap_summary: Analysis summary

In cekehe/rappp: QC, data transformation and visualization for PAPP

Analysis summary

Description

Summarizes number of filtered/flagged beads/samples, amino acid lenghts and protein representation.

Usage

ap_summary(x, filter = TRUE)

Arguments

x	List with at least two elements, see Deatils for naming and content.
filter	Logical, should samples and beads be filtered away before summary?

Details

The x list needs to include at least the elements

SAMPLES = Sample info. Including column "sample_name" with LIMS-IDs, and "Filtered" if argument filter is TRUE.

BEADS = Beads info. Including columns:

"Type" with info about type of content on bead, at least including "PrEST" for PrESTs,

"PrEST.seq..aa." with amino acid sequences,

"Filtered" with filtering annotation, e.g. from other ap_-functions,

"Flagged" with filtering annotation, e.g. from other ap_-functions.

cekehe/rappp documentation built on May 17, 2022, 8:54 a.m.