make_peptides: Make peptides

In cekehe/rappp: QC, data transformation and visualization for PAPP

Make peptides

Description

Get possible peptide designs across different lengths and overlaps.

Usage

make_peptides(sequence, lengths = 15:20, min_overlap = 2, min_shift = 1)

Arguments

sequence	string with amino acid sequence to make peptides from, see Examples for how to use with the Clipboard.
lengths	number of amino acids per peptide, can be a vector of lenghts.
min_overlap	the shortest allowed overlap between peptides
min_shift	the shortest allowed shift between peptides

Value

A list with one element per design

Examples

## The input sequence can easily be copied from wherever,
    like Excel, LIMS etc and used directly in the function:
## on PC
make_peptides(readClipboard())

## on MAC
make_peptides(t(read.table(pipe("pbpaste"), stringsAsFactors = FALSE)))

cekehe/rappp documentation built on May 17, 2022, 8:54 a.m.