ap_norm: Full AP data transformation

In cekehe/rappp: QC, data transformation and visualization for PAPP

Full AP data transformation

Description

Wrapper function for full Autoimmunity Profiling data transformations.

Usage

ap_norm(x, MADlimits = seq(0, 70, 5), ...)

Arguments

x	List of MFI values with two levels per element: level one = assay data sets ; level two = bead subsets (e.g. wih and w/o controls)
MADlimits	vector of MADs values used as boundaries for binning (≥MADs).
...	See respective functions for details: ap_mads, ap_scoring, ap_binary, ap_cutoff_selection

Details

The input values should be MFI values, and structured as a list, even if only one data set is used (see examples).

Value

List with 7 main elements

[[1]] Input MFI

[[2]] MADs

[[3]] Scores

[[4]] Binary

[[5]] Antigen specific cutoffs selected based on density slope.

[[6]] Density information

[[7]] Cutoff translation key

cekehe/rappp documentation built on May 17, 2022, 8:54 a.m.