Files in celiason/phenotools
Tools for the analysis and assembly of phenomic data in R

.DS_Store
.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/cleantext.R R/collapse.R R/concat.R R/duplicated.nex.R R/dupsum.R R/filter.R R/generate_ontology.R R/getcomments.R R/internal.R R/is.nex.R R/na.omit.nex.R R/plot.nex.R R/print.nex.R R/printneat.R R/printout.R R/read.nex.R R/read_ontology.R R/remove.invar.R R/searchtree.R R/sort.nex.R R/subset.nex.R R/traitlink.R R/twig-data.R R/write.nex.R README.md R_temp/NEWduplicated.nex.R
R_temp/TEMP_subsetnex.pl
R_temp/addmeta.R R_temp/bipartite/LPA_wb_plus.R R_temp/bipartite/MODULARPLOT.R R_temp/bipartite/README.md R_temp/bipartite/convert2moduleWeb.R R_temp/biproj.R R_temp/buildnex (old).R R_temp/buildnex.R R_temp/buildnex2.R R_temp/capture_states.R R_temp/cleanchars.R R_temp/computeBicliques.R
R_temp/concatnex.pl
R_temp/cosinesim.R R_temp/duptree.R R_temp/find_bicliques.R R_temp/find_duplicates.R R_temp/findpaths.R R_temp/findrefs.R R_temp/get_comments.R R_temp/interleave_chars.R R_temp/merge_traits.R
R_temp/nexml merge test/characters.xml
R_temp/nexml merge test/merge_nexml.pl
R_temp/nexml merge test/test.pl
R_temp/nexml merge test/test.xml
R_temp/nexml merge test/trees.xml
R_temp/nexus merge test/concatenated.txt
R_temp/nexus merge test/hello.pl
R_temp/nexus merge test/taxa.txt
R_temp/nexus merge test/toy1.nex
R_temp/nexus merge test/toy2.nex
R_temp/nexus merge test/useful snippets.pl
R_temp/nexus merging snippets.txt
R_temp/ontology from chars in nexus file.R R_temp/ontology from text file.R R_temp/polychor discrete trait correlations.R R_temp/read_chars_from_pdf.R R_temp/schinke.R R_temp/stringdistmatrix.R R_temp/text_convert_functions.R R_temp/training.R R_temp/traitcor.R R_temp/traitlink_toadd.R R_temp/user generated ontology.R R_temp/word_cooccur.R R_temp/write_nex_old.R
TODO
data/twig.rda
inst/extdata/Bertelli_2005.pdf
inst/extdata/baumel_ontology.txt
inst/extdata/brusatte2014_charlist.txt
inst/extdata/brusatte2014_matrix.txt
inst/extdata/clarke_2006.nex
inst/extdata/nesbitt_2015.nex
man/cleantext.Rd man/collapse.Rd man/concat.Rd man/dim.nex.Rd man/duplicated.nex.Rd man/dupsum.Rd man/filter.Rd man/findgroups.Rd man/generate_ontology.Rd man/getcomments.Rd man/head.nex.Rd man/is.nex.Rd man/na.omit.nex.Rd man/plot.nex.Rd man/print.nex.Rd man/printneat.Rd man/printout.Rd man/read.nex.Rd man/read_ontology.Rd man/remove.invar.Rd man/searchtree.Rd man/sort.nex.Rd man/subset.nex.Rd man/summary.nex.Rd man/tail.nex.Rd man/traitlink.Rd man/twig.Rd man/update.nex.Rd man/write.nex.Rd
celiason/phenotools documentation built on Sept. 12, 2019, 6:49 p.m.