Files in celiason/phenotools
Tools for the analysis and assembly of phenomic data in R
.DS_Store
.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/cleantext.R
R/collapse.R
R/concat.R
R/duplicated.nex.R
R/dupsum.R
R/filter.R
R/generate_ontology.R
R/getcomments.R
R/internal.R
R/is.nex.R
R/na.omit.nex.R
R/plot.nex.R
R/print.nex.R
R/printneat.R
R/printout.R
R/read.nex.R
R/read_ontology.R
R/remove.invar.R
R/searchtree.R
R/sort.nex.R
R/subset.nex.R
R/traitlink.R
R/twig-data.R
R/write.nex.R
README.md
R_temp/NEWduplicated.nex.R
R_temp/TEMP_subsetnex.pl
R_temp/addmeta.R
R_temp/bipartite/LPA_wb_plus.R
R_temp/bipartite/MODULARPLOT.R
R_temp/bipartite/README.md
R_temp/bipartite/convert2moduleWeb.R
R_temp/biproj.R
R_temp/buildnex (old).R
R_temp/buildnex.R
R_temp/buildnex2.R
R_temp/capture_states.R
R_temp/cleanchars.R
R_temp/computeBicliques.R
R_temp/concatnex.pl
R_temp/cosinesim.R
R_temp/duptree.R
R_temp/find_bicliques.R
R_temp/find_duplicates.R
R_temp/findpaths.R
R_temp/findrefs.R
R_temp/get_comments.R
R_temp/interleave_chars.R
R_temp/merge_traits.R
R_temp/nexml merge test/characters.xml
R_temp/nexml merge test/merge_nexml.pl
R_temp/nexml merge test/test.pl
R_temp/nexml merge test/test.xml
R_temp/nexml merge test/trees.xml
R_temp/nexus merge test/concatenated.txt
R_temp/nexus merge test/hello.pl
R_temp/nexus merge test/taxa.txt
R_temp/nexus merge test/toy1.nex
R_temp/nexus merge test/toy2.nex
R_temp/nexus merge test/useful snippets.pl
R_temp/nexus merging snippets.txt
R_temp/ontology from chars in nexus file.R
R_temp/ontology from text file.R
R_temp/polychor discrete trait correlations.R
R_temp/read_chars_from_pdf.R
R_temp/schinke.R
R_temp/stringdistmatrix.R
R_temp/text_convert_functions.R
R_temp/training.R
R_temp/traitcor.R
R_temp/traitlink_toadd.R
R_temp/user generated ontology.R
R_temp/word_cooccur.R
R_temp/write_nex_old.R
TODO
data/twig.rda
fig2-01.jpg
inst/extdata/Bertelli_2005.pdf
inst/extdata/baumel_ontology.txt
inst/extdata/brusatte2014_charlist.txt
inst/extdata/brusatte2014_matrix.txt
inst/extdata/clarke_2006.nex
inst/extdata/nesbitt_2015.nex
man/cleantext.Rd
man/collapse.Rd
man/concat.Rd
man/dim.nex.Rd
man/duplicated.nex.Rd
man/dupsum.Rd
man/filter.Rd
man/findgroups.Rd
man/generate_ontology.Rd
man/getcomments.Rd
man/head.nex.Rd
man/is.nex.Rd
man/na.omit.nex.Rd
man/plot.nex.Rd
man/print.nex.Rd
man/printneat.Rd
man/printout.Rd
man/read.nex.Rd
man/read_ontology.Rd
man/remove.invar.Rd
man/searchtree.Rd
man/sort.nex.Rd
man/subset.nex.Rd
man/summary.nex.Rd
man/tail.nex.Rd
man/traitlink.Rd
man/twig.Rd
man/update.nex.Rd
man/write.nex.Rd
