Man pages for cells2numbers/migrationminer
Package for Creating and Analyzing Migration Profiles for Single Cell Tracking / Time Lapse Data

angleCalculate angle of a track object.
assessAssess track quality.
chemotaxis_indexCalculate the mean chemotaxis index of a track object.
directionalityCalculate the directionality of a track object.
directional_persistenceCalculate the mean directional_persistence of a track object.
displaceAdd spatial displacement per frame for each track object
distanceCalculate distance traveled and the integrated distance...
forward_migration_indexCompute the forward migration index of a tracked object
lifetimeCalculate lifetime of a track object.
mean_positionGet mean position
mean_squared_displacementCalculate the mean squared displacement of a track object.
sector_analysisperform sector analysis and label each track according to its...
speedAdd spatial displacement per frame for each track object
trackCompute track statistics
validate_tracksIdentify valid tracks. Valid tracks are defined as tracks...
valid_observation_timecalculate valid observation time as sum of the length of all...
cells2numbers/migrationminer documentation built on Dec. 14, 2017, 12:13 a.m.