assess: Assess track quality.

In cells2numbers/migrationminer: Package for Creating and Analyzing Migration Profiles for Single Cell Tracking / Time Lapse Data

Description

Assess track quality.

Usage

assess(tracks, min_path_length = 19, strata)

Arguments

tracks	data frame with track objects
min_path_length	minimum length of a valid track
strata	column name of track index column

Value

valid_observation_time

Examples

 data <- tibble::tibble(
   Metadata_timePoint = c(1:5),
   Location_Center_X = c(1, 2, 3, 4, 5),
   Location_Center_Y = c(1, 1, 1, 1, 1),
   TrackObjects_Label = c(rep(1, 5))
 )
 strata <- "TrackObjects_Label"
 data <- dplyr::group_by_(data, strata)
 tracks <- migrationminer::track(data, strata)
 min_path_length <- 5
 trackQuality <- migrationminer::assess(tracks,min_path_length,strata)

cells2numbers/migrationminer documentation built on May 28, 2019, 7:12 a.m.