R/comethyl.R

In cemordaunt/comethyl: An R Package for Weighted Region Comethylation Network Analysis

#' comethyl: An R package for weighted region comethylation network analysis
#'
#' Comethyl builds upon the \pkg{WGCNA} package to identify and interpret modules
#' of comethylated regions from whole-genome bisulfite sequencing data. Regions
#' are defined from clusters of CpG sites or from genomic annotations, and then
#' percent methylation values are used to identify comethylation modules.
#' Interesting modules are identified and explored by comparing with sample
#' traits and examining functional enrichments. Results are then visualized with
#' high-quality, editable plots from \pkg{ggplot2}.
#'
#' @author
#' Charles Mordaunt
#'
#' @seealso \itemize{
#'         \item GitHub: \url{https://github.com/cemordaunt/comethyl}
#'         \item Documentation and vignettes: \url{https://cemordaunt.github.io/comethyl/}
#' }
#'
#' @docType package
#' @name comethyl
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