R/data.R

In cgplab/ROCkerMeth: Receiver Operating Characteristic curves analyzer for DNA methylation data

#' AUC toy example
#'
#' A toy example of AUC vector produced by the compute_auc() function.
#'
#' @docType data
#' @keywords datasets
#' @name auc_toy_vector
#' @usage data(auc_toy_vector)
"auc_toy_vector"


#' PRAD molecular subtypes
#'
#' The molecular subtypes annotation of TCGA-PRAD data
#' @docType data
#' @keywords datasets
#' @name PRAD_molecular_subtypes
#' @usage data(PRAD_molecular_subtypes)
"PRAD_molecular_subtypes"


#' PRAD AUC
#'
#' AUC vector obtained with TCGA-PRAD dataset included in the package
#'
#' @docType data
#' @keywords datasets
#' @name PRAD_auc
#' @usage data(PRAD_auc)
"PRAD_auc"


#' Illumina 450K hg38
#'
#' Reference table for the illumina 450K platform, hg38 coordinates
#'
#' @docType data
#' @keywords datasets
#' @name illumina450k_hg38
#' @usage data(illumina450k_hg38)
"illumina450k_hg38"


#' Illumina 450K hg19
#'
#' Reference table for the illumina 450K platform, hg19 coordinates
#'
#' @docType data
#' @keywords datasets
#' @name illumina450k_hg19
#' @usage data(illumina450k_hg19)
"illumina450k_hg19"


#' Control toy table
#'
#' A toy table of beta values (control)
#'
#' @docType data
#' @keywords datasets
#' @name control_toy_table
#' @usage data(control_toy_table)
"control_toy_table"


#' PRAD NT subset
#'
#' A subset of normal adjacent samples from the TCGA-PRAD dataset (porstate adenocarcinoma)
#'
#' @docType data
#' @keywords datasets
#' @name PRAD_NT_subset
#' @usage data(PRAD_NT_subset)
"PRAD_NT_subset"

#' PRAD sample score
#'
#' Single sample scores computed on TCGA-PRAD subset
#'
#' @docType data
#' @keywords datasets
#' @name PRAD_sample_score
#' @usage data(PRAD_sample_score)
"PRAD_sample_score"

#' PRAD TP subset
#'
#' A subset of primary tumor samples from the TCGA-PRAD dataset (porstate adenocarcinoma)
#'
#' @docType data
#' @keywords datasets
#' @name PRAD_TP_subset
#' @usage data(PRAD_TP_subset)
"PRAD_TP_subset"

#' Reference table example
#'
#' Reference table for examples
#'
#' @docType data
#' @keywords datasets
#' @name reference_example
#' @usage data(reference_example)
"reference_example"

#' Reference toy table
#'
#' Reference table for toy dataset
#'
#' @docType data
#' @keywords datasets
#' @name reference_toy_table
#' @usage data(reference_toy_table)
"reference_toy_table"

#' Tumor example
#'
#' Dataset of beta values to run examples (tumor)
#'
#' @docType data
#' @keywords datasets
#' @name tumor_example
#' @usage data(tumor_example)
"tumor_example"

#' Tumor toy table
#'
#' A toy table of beta values (tumor)
#'
#' @docType data
#' @keywords datasets
#' @name tumor_toy_table
#' @usage data(auc_toy_vector)
"tumor_toy_table"

#' AUC toy example
#'
#' Dataset of beta values to run examples (control)
#'
#' @docType data
#' @keywords datasets
#' @name control_example
#' @usage data(auc_toy_vector)
"control_example"