do_hierarchical_clustering: Perform hierarchical clustering of the radiomic dataset

In cgplab/RadAR: Radiomic Analysis with R

Description

Perform hierarchical clustering of the radiomic dataset

Usage

do_hierarchical_clustering(
  rdr = NULL,
  which_data = "scaled",
  method_dist_row = "euclidean",
  method_dist_col = "correlation.pearson",
  method_hcl_row = "ward.D",
  method_hcl_col = "ward.D"
)

Arguments

rdr	A RadAR object (class SummarizedExperiment).
which_data	(character) Which data use for the computation of the correlation coefficients. It can be one of the following: "normal", "scaled", "normalized".
method_dist_row	(character) Which method use to computed distance matrix between features (rows). Print available methods by print_distance_methods
method_dist_col	(character) Which method use to computed distance matrix between samples (columns). Print available methods by print_distance_methods
method_hcl_row	(character) Which method use to generate hierarchical clustering for features (rows). Print available methods by print_hcl_methods
method_hcl_col	(character) Which method use to generate hierarchical clustering for samples (columns). Print available methods by print_hcl_methods

Value

An updated rdr (a RadAR object)

Author(s)

Matteo Benelli ([e-mail])

cgplab/RadAR documentation built on Nov. 10, 2021, 1:32 a.m.