normalize_feature_values: Apply normalization to feature values

Description Usage Arguments Value Author(s)

View source: R/data_utils_functions.R

Description

Feature values are quantile normalized by limma package. After quantile normalization, the distributions of feature values are identical in terms of statistical properties.

Usage

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normalize_feature_values(
  rdr = NULL,
  method = "quantile",
  which_data = "scaled"
)

Arguments

rdr

A RadAR object (class SummarizedExperiment)

method

Only quantile normalization has been implemented so far. After quantile normalization, the distributions of feature values are identical in terms of statistical properties

which_data

(character) Which data should be normalized. It can be one of "normal" or "scaled".

Value

An updated rdr (a RadAR object)

Author(s)

Matteo Benelli (matteo.benelli@uslcentro.toscana.it)


cgplab/RadAR documentation built on Nov. 10, 2021, 1:32 a.m.