Man pages for chandlerzuo/atIndel
Affinity test for identifying regularity Indels
| atIndel | atIndel: Affinity test for identifying regularity Indels. |
| comp_indel_mat_d | Compute the D matrix for indel calculation. |
| indel_info | A data set for indel information. |
| indel_motif_scores | Compute the motif scores given a motif library and a list of... |
| indel_p_values | Compute the motif scores given a motif library and a list of... |
| motif_lib | A sample motif library. |
| plot_indel_binding | Plot the indel binding for both reference and mutated... |
| prior | Default stationary distribution for nucleotide sequences in... |
| p_values_for_motif | Compute p-values for a single motif. |
| pvalue_single_thread_helper | Compute the p-values for score change for a single motif and... |
| pval_with_less_var | Select p-value estimates with less variance. |
| trans_mat | Default transition probability matrix for nucleotide... |
