trans_mat: Default transition probability matrix for nucleotide...

Description Format Author(s)

Description

This parameter is fitted using randomly selected 100K 100bp sequences from hg19, excluding the first and last 10k base pairs of each chromosome, according to a 1st-order Markov model.

Format

A 4 by 4 numeric matrix.

Author(s)

Qinyi Zhou qinyi.zhou@utdallas.edu, Chandler Zuo chandler.c.zuo@gmail.com, Sunyoung Shin sunyoung.shin@utdallas.edu


chandlerzuo/atIndel documentation built on Aug. 20, 2021, 6:33 p.m.