Man pages for chandlerzuo/atIndel
Affinity test for identifying regularity Indels

atIndelatIndel: Affinity test for identifying regularity Indels.
comp_indel_mat_dCompute the D matrix for indel calculation.
indel_infoA data set for indel information.
indel_motif_scoresCompute the motif scores given a motif library and a list of...
indel_p_valuesCompute the motif scores given a motif library and a list of...
motif_libA sample motif library.
plot_indel_bindingPlot the indel binding for both reference and mutated...
priorDefault stationary distribution for nucleotide sequences in...
p_values_for_motifCompute p-values for a single motif.
pvalue_single_thread_helperCompute the p-values for score change for a single motif and...
pval_with_less_varSelect p-value estimates with less variance.
trans_matDefault transition probability matrix for nucleotide...
chandlerzuo/atIndel documentation built on Jan. 20, 2024, 4:10 a.m.