FindNearestNeighbour: FindNearestNeighbour: Given cell's short encoding and long...
In chansigit/scFly: Mapping cells with single-cell transcriptome data

FindNearestNeighbour: Given cell's short encoding and long encoding, search its most similar cell

1 2	FindNearestNeighbour(query.shortEncoding, query.longEncoding, referenceObject, radius = 2, topN = 5, return.simple = FALSE)

`query.shortEncoding`	a short binary vector for multi-probe searching
`query.longEncoding`	a long binary vector for searching
`referenceObject`	a group of cells for reference
`radius`	hamming distance threshold radius
`topN`	number of nearest neighbours returned
`return.simple`	whether the function returns row indices only