Man pages for chaolab2019/chaoUtility
chao lab utility
| bird | bird data: |
| Boot_p | R code for JADE (Joint species-rank Abundance... |
| bootp_jade_abu | DetAbu(x, zero=FALSE) is a function of estimating detected... |
| bootp_one_abu | Estimating species relative abundance/incidnece bootstrap Pi... |
| bootp_one_abu_sar | estimate the bootstrap population of an incidence sample... |
| check_Bootype | R code for check bootstrap type |
| check_data | R code for check data |
| check_datatype | R code for check datatype |
| DetAbu | DetAbu(x, zero=FALSE) is a function of estimating detected... |
| DetInc | Estimating detected species incidence probability |
| incdata | incidence freq data: |
| phybird | phybird data: |
| phybird.new | phybird.new data: |
| phy_BranchAL_Abu | R code for phylo to Chaophyabu function, we defind... |
| phyBranchAL_Abu | R code for phylo to Chaophyabu function, speed up performance |
| phy_BranchAL_Inc | R code for phylo to Chaophyabu function, we defind... |
| phyBranchAL_Inc | R code for phylo to Chaophyabu function, speed up performance |
| phy_BranchAL_IncBootP | R code for phylo to Chaophyabu function, calculte inodeP by... |
| phyExpandData | Expand branch abundance/incience and branch length |
| phyincisimple | phyincisimple data: |
| phyincisimple.new | phyincisimple data: |
| phyincPdata | phyBranchALinc.r data: |
| phyLengthbyT | Calculate branch length by reference ageT |
| phylo2chaolabphy | R code for phylo to phylog like function, we defind... |
| phylo2phytree | R code for phylo to phytree function, we defind chaophytree... |
| treesample | treesample data: |
| UndAbu | Estimating undetected species relative abundance |
| UndInc | Estimating undetected species incidence probability |
