phy_BranchAL_Abu: R code for phylo to Chaophyabu function, we defind...
In chaolab2019/chaoUtility: chao lab utility
Description
Usage
Arguments
Value
Examples
Description
R code for phylo to Chaophyabu function, we defind chaophytree objects
Usage
1
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phy_BranchAL_Abu(phylo, data, datatype = "abundance", refT = 0,
rootExtend = T, remove0 = T)
Arguments
phylo
a phylo object
data
a vector with names
Value
a Chaophyabu objects
Examples
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data(AbuALdata)
adata<-AbuALdata$abudata
atree<-AbuALdata$tree
vdata<-adata$EM
names(vdata)<-rownames(adata)
refTs<-c(400,325,250)
result<-phy_BranchAL_Abu(atree,vdata,datatype="abundance",refTs)
result$treeNabu
result$treeH
result$BLbyT
chaolab2019/chaoUtility documentation built on Feb. 26, 2020, 2:48 p.m.
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Description Usage Arguments Value Examples
Description
R code for phylo to Chaophyabu function, we defind chaophytree objects
Usage
1 2 | phy_BranchAL_Abu(phylo, data, datatype = "abundance", refT = 0,
rootExtend = T, remove0 = T)
|
Arguments
phylo |
a phylo object |
data |
a vector with names |
Value
a Chaophyabu objects
Examples
1 2 3 4 5 6 7 8 9 10 | data(AbuALdata)
adata<-AbuALdata$abudata
atree<-AbuALdata$tree
vdata<-adata$EM
names(vdata)<-rownames(adata)
refTs<-c(400,325,250)
result<-phy_BranchAL_Abu(atree,vdata,datatype="abundance",refTs)
result$treeNabu
result$treeH
result$BLbyT
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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