phy_BranchAL_IncBootP: R code for phylo to Chaophyabu function, calculte inodeP by...
In chaolab2019/chaoUtility: chao lab utility
Description
Usage
Arguments
Value
Examples
View source: R/phyBranchALinc.r
Description
R code for phylo to Chaophyabu function, calculte inodeP by incidence bootstrap p
the formula is 1-(1-p1)(1-p2)
Usage
1
2
phy_BranchAL_IncBootP(phylo, pdata, refT = 0, rootExtend = T,
remove0 = T)
Arguments
phylo
a phylo object
pdata
a vector with names: incidence bootstrap p
Value
a Chaophyabu objects
Examples
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data(phyincPdata)
pdata <- phyincPdata$pdata
phylotree <- phyincPdata$tree
refTs<-c(80,90,100)
result<-phy_BranchAL_IncBootP(phylotree,pdata,refTs,remove0=FALSE)
result$treeNincBP
result$treeH
result$BLbyT
chaolab2019/chaoUtility documentation built on Feb. 26, 2020, 2:48 p.m.
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Description Usage Arguments Value Examples
View source: R/phyBranchALinc.r
Description
R code for phylo to Chaophyabu function, calculte inodeP by incidence bootstrap p the formula is 1-(1-p1)(1-p2)
Usage
1 2 | phy_BranchAL_IncBootP(phylo, pdata, refT = 0, rootExtend = T,
remove0 = T)
|
Arguments
phylo |
a phylo object |
pdata |
a vector with names: incidence bootstrap p |
Value
a Chaophyabu objects
Examples
1 2 3 4 5 6 7 8 | data(phyincPdata)
pdata <- phyincPdata$pdata
phylotree <- phyincPdata$tree
refTs<-c(80,90,100)
result<-phy_BranchAL_IncBootP(phylotree,pdata,refTs,remove0=FALSE)
result$treeNincBP
result$treeH
result$BLbyT
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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