tidyMultiAssay-data-formats: Data frame formats used in the tidyMultiAssay package

In chapmandu2/biotidyr: Tidy functions for MultiAssayExperiment and PharmacoGX objects

Description

The tidyMultiAssay package works with the following data frame formats:

tall_df

Common currency minimal data frame which can contain any data type

resp_df

Used to store user specified response data from a cell panel screen or siRNA screen

gvg_df

Genetic vs Genetic data frame used to model or plot one set of genetic features against another set

rvg_df

Response vs Genetic data frame used to model or plot a set of response data against a set of genetic features

The get_df_format and check_df_format functions can be used to determine and check the data frame format.

Author(s)

Phil Chapman <[e-mail]>

Examples

#tall_df example
data(example_tall_df)
dplyr::tbl_df(example_tall_df)

#resp_df example
data(dietlein_data)
dplyr::tbl_df(dietlein_data)

#gvg_df example
data(example_gvg_df)
dplyr::tbl_df(example_gvg_df)

#rvg_df example
data(example_rvg_df)
dplyr::tbl_df(example_rvg_df)

chapmandu2/biotidyr documentation built on May 13, 2019, 3:29 p.m.