Files in charlotte-ngs/asmss2022

Applied Statistical Methods in Animal Science - Spring Semester 2022

NEWS.md R/ex_convert.R R/ex_create.R R/ex_deploy.R README.Rmd README.md cn/01_intro.Rmd cn/02_regr.Rmd cn/03_flem.Rmd cn/04-msel.Rmd cn/05_mlem.Rmd cn/_bookdown_files/cn-asm-ss2022_files/figure-latex/fig-reg-bw-bc-1.pdf cn/_bookdown_files/cn-asm-ss2022_files/figure-latex/rep-obs-bw-bc-fig-1.pdf cn/_bookdown_files/cn-asm-ss2022_files/figure-latex/rep-obs-bw-bc-res-plot-1.pdf cn/index.Rmd cn/odg/asmbayespriorposterior.pdf cn/odg/compareregflem.pdf cn/odg/coordinate-system.pdf cn/odg/datacollectionflow.pdf cn/odg/datastucturegbv.pdf cn/odg/deter-vs-stoch.pdf cn/odg/facerecog.pdf cn/odg/fig-non-linear-rel.pdf cn/odg/flem_geno.pdf cn/odg/genotypicvalue.pdf cn/odg/idealpopsingletrait.pdf cn/odg/infinitesimalvspolygenic.pdf cn/odg/lassosubsetselection.pdf cn/odg/linkagesnpqtl.pdf cn/odg/memvsbvm.pdf cn/odg/monogenicsnpmodel.pdf cn/odg/selectsnploci.pdf cn/odg/showregressionbwonbc.pdf cn/odg/snpgeneticconfiguration.pdf cn/odg/twostepgs.pdf cn/odg/vector-cs-perspecitve.pdf cn/odg/vector-physics-perspective.pdf cn/odg/vector-scalar-multiplication.pdf cn/odg/vector-sum.pdf docs/cn/01_intro.pdf docs/cn/02_regr.pdf docs/cn/03_flem.pdf docs/cn/03_regdvar.pdf docs/cn/04_msel.pdf docs/cn/05_mlem.pdf docs/cn/05_mlem_animal_gblup.pdf docs/cn/05_mlem_part2.pdf docs/cn/05_mlem_pblup_sire.pdf docs/cn/cn-asm-ss2022_references.pdf docs/ex/asm_ex01.pdf docs/ex/asm_ex02.pdf docs/ex/asm_ex03.pdf docs/ex/asm_ex04.pdf docs/ex/asm_ex05.pdf docs/ex/asm_ex06.pdf docs/ex/asm_ex07.pdf docs/ex/asm_ex08.pdf docs/ex/asm_ex09.pdf docs/ex/asm_ex10.pdf docs/ex/asm_ex11.pdf docs/ex/asm_test_exam.pdf docs/ohp/20220221_ohp_pictures.pdf docs/ohp/20220228_ohp_pictures.pdf docs/sl/asm-w01-v01-intro.pdf docs/sl/l02_regr.pdf docs/sl/l02_regr_part2.pdf docs/sl/l03_flem.pdf docs/sl/l03_flem_with_notes.pdf docs/sl/l04_regdvar.pdf docs/sl/l05_contrasts.pdf docs/sl/l06_con_plot_sim.pdf docs/sl/l07_model_selection.pdf docs/sl/l08_anova_rem.pdf docs/sl/l09_mlem.pdf docs/sl/l10_pblup_sire_model.pdf docs/sl/l12_animal_model_gblup.pdf docs/sol/asm_ex01_sol.pdf docs/sol/asm_ex02_sol.pdf docs/sol/asm_ex03_sol.pdf docs/sol/asm_ex04_sol.pdf docs/sol/asm_ex05_sol.pdf docs/sol/asm_ex06_sol.pdf docs/sol/asm_ex07_sol.pdf docs/sol/asm_ex08_sol.pdf docs/sol/asm_ex09_sol.pdf docs/sol/asm_ex10_sol.pdf docs/sol/asm_ex11_sol.pdf docs/sol/asmss2021_exam_sol_test.pdf ex/asm_ex01/asm_ex01.Rmd ex/asm_ex02/asm_ex02.Rmd ex/asm_ex03/asm_ex03.Rmd ex/asm_ex04/asm_ex04.Rmd ex/asm_ex05/asm_ex05.Rmd ex/asm_ex06/asm_ex06.Rmd ex/asm_ex07/asm_ex07.Rmd ex/asm_ex08/asm_ex08.Rmd ex/asm_ex09/asm_ex09.Rmd ex/asm_ex10/asm_ex10.Rmd ex/asm_ex11/asm_ex11.Rmd ex/asm_sol/asmss2021_exam_sol_test.Rmd ex/asm_sol/odg/p01plot1.pdf ex/asm_sol/odg/p01plot2.pdf ex/asm_sol/pdf/p01_plot02.pdf ex/asm_sol/pdf/p01_plot1.pdf ex/asm_sol/pdf/p01_plot2.pdf ex/asm_test_exam/asm_test_exam.Rmd ex/asm_test_exam/odg/p01plot1.pdf ex/asm_test_exam/odg/p01plot2.pdf exam/asm_exam_sol/asm_exam_sol.Rmd exam/asm_exam_sol/odg/reg-comp.pdf exam/asm_exam_sol/pdf/asm_exam_sol.pdf exam/asm_exam_tsk/asm_exam_tsk.Rmd exam/asm_exam_tsk/odg/reg-comp.pdf man/convert_exercise_to_nb.Rd man/create_exercise.Rd man/create_exercise_gel.Rd man/deploy_exercise.Rd man/deploy_uni_src.Rd misc/20220305_flem_dataset/20220305_flem_dataset.Rmd misc/20220312_genomics_dataset/20220312_genomics_dataset.Rmd misc/20220316_contrasts_lm/20220316_contrasts_lm.Rmd misc/20220408_generate_data_asm_ex07_p1/20220408_generate_data_asm_ex07_p01.Rmd misc/20220411_msc_topics/MasterThesisTopics_SpringSemester2022.Rmd misc/20220420_generate_repeated_measures/20220420_generate_repeated_measure.Rmd misc/20220509_sire_model_pedigreemm/20220509_sire_model_pedigreemm.Rmd misc/20220520_pedigree_simulation_package/20220520_pedigree_simulation_package.Rmd misc/20220522_genomic_data_simulation/20220522_genomic_data_simulation.Rmd misc/20220527_exam_data_p01/20220527_exam_data_p01.Rmd misc/20220527_exam_data_p02/20220527_exam_data_p02.Rmd misc/20220527_exam_data_p03/20220527_exam_data_p03.Rmd misc/20220527_exam_data_p04/20220527_exam_data_p04.Rmd misc/20220528_exam_data_p05/20220528_exam_data_p05.Rmd nb/asm_ex01/asm_ex01_nb_src.Rmd nb/asm_ex02/asm_ex02_nb_src.Rmd nb/asm_ex03/asm_ex03_nb_src.Rmd nb/asm_ex04/asm_ex04_nb_src.Rmd nb/asm_ex05/asm_ex05_nb_src.Rmd nb/asm_ex06/asm_ex06_nb_src.Rmd nb/asm_ex07/asm_ex07_nb_src.Rmd nb/asm_ex08/asm_ex08_nb_src.Rmd nb/asm_ex09/asm_ex09_nb_src.Rmd nb/asm_ex10/asm_ex10_nb_src.Rmd nb/asm_ex11/asm_ex11_nb_src.Rmd ohp/20220221_ohp_pictures/20220221_ohp_pictures.Rmd ohp/20220221_ohp_pictures/odg/ohp-page3460.pdf ohp/20220221_ohp_pictures/odg/ohp-page3461.pdf ohp/20220228_ohp_pictures/20220228_ohp_pictures.Rmd ohp/20220228_ohp_pictures/odg/ohp-page3466.pdf ohp/20220228_ohp_pictures/odg/ohp-page3468.pdf ohp/20220228_ohp_pictures/odg/ohp-page3469.pdf ohp/20220228_ohp_pictures/odg/ohp-page3470.pdf ohp/20220228_ohp_pictures/odg/ohp-page3471.pdf ohp/20220228_ohp_pictures/odg/ohp-page3472.pdf sl/l01_intro/asm-w01-v01-intro.Rmd sl/l01_intro/odg/datalogistics.pdf sl/l01_intro/odg/face-recognition.pdf sl/l01_intro/odg/facerecog.pdf sl/l01_intro/odg/farm-infrastrucutre.pdf sl/l01_intro/odg/linkagesnpqtl.pdf sl/l01_intro/odg/monogenicmodeltraitdistribution.pdf sl/l01_intro/odg/monogenicmodeltraitdistributionnoeffect.pdf sl/l01_intro/odg/snparchitecture.pdf sl/l01_intro/odg/summarytraditionalvsgs.pdf sl/l01_intro/odg/twostepprocedure.pdf sl/l02_regr/l02_regr.Rmd sl/l02_regr/odg/lsq-plot.pdf sl/l02_regr/odg/measure-band.pdf sl/l02_regr_part2/l02_regr_part2.Rmd sl/l03_flem/l03_flem.Rmd sl/l03_flem/odg/datastucturegbv.pdf sl/l04_regdvar/l04_regdvar.Rmd sl/l04_regdvar/odg/mod-slm.pdf sl/l04_regdvar/odg/single-locus-model.pdf sl/l05_contrasts/l05_contrasts.Rmd sl/l06_con_plot_sim/l06_con_plot_sim.Rmd sl/l07_model_selection/l07_model_selection.Rmd sl/l07_model_selection/odg/comp-two-models.pdf sl/l07_model_selection/odg/show-full-model.pdf sl/l08_anova_rem/l08_anova_rem.Rmd sl/l09_mlem/l09_mlem.Rmd sl/l10_pblup_sire_model/l10_pblup_sire_model.Rmd sl/l12_animal_model_gblup/l12_animal_model_gblup.Rmd vignettes/course_additional_material.Rmd vignettes/course_exercises.Rmd vignettes/course_notes.Rmd vignettes/course_solutions.Rmd