repSave: Save repertoire files to the disk.

In charlotterich/immunarch_code: Painless Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires in R

Description

The repSave function is deigned to save your data to the disk in desirable format. Currently supports "immunarch" and "vdjtools" file formats.

Usage

repSave(.data, .path, .format = c("immunarch", "vdjtools"), .compress = T)

Arguments

.data	An R dataframe, a list of R dataframes or a list with data and meta where first element is a list of dataframes and the latter is a dataframe with metadata.
.path	A string with the path to the output directory. It should include file name if a single dataframe is provided to .data argument.
.format	A string with desirable format specification. Current options are "immunarch" and "vdjtools".
.compress	A boolean value. Defines whether the output will be compressed or not.

Details

It is not necessary to create directories beforehand. If the provided directory does not exist it will be created automatically.

charlotterich/immunarch_code documentation built on Jan. 24, 2020, 12:08 a.m.