vis_immunr_kmer_profile_main: Visualise kmer profiles

In charlotterich/immunarch_code: Painless Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires in R

Description

Visualise kmer profiles

Usage

vis_immunr_kmer_profile_main(.data, .plot, ...)

Arguments

.data	Kmer data, an output from kmer_profile.
.plot	String specifying the plot type: - "seqlogo" for traditional sequence logo plots using vis_seqlogo; - "textlogo" for modified approach to sequence logo plots via text labels using vis_textlogo;
...	Other arguments passed to vis_textlogo or vis_seqlogo, depending on the ".plot" argument.

Examples

## Not run: 
data(immdata)
getKmers(immdata$data[[1]], 5) %>% kmer_profile() %>% vis("seqlogo")

## End(Not run)

charlotterich/immunarch_code documentation built on Jan. 24, 2020, 12:08 a.m.