Description Usage Arguments Value
Retrieve small molecule and matrix peak lists and make consensus peak lists
1 2 3 | getSmallMolSpectra(pool, sampleIDs = NULL, dendrogram, brushInputs,
matrixIDs = NULL, peakPercentPresence, lowerMassCutoff,
upperMassCutoff, minSNR)
|
pool |
pool |
sampleIDs |
character vector of IDs (currently not used) |
dendrogram |
protein dendrogram that was brushed |
brushInputs |
brusked dendrogram outputs |
matrixIDs |
sampleID that will be used as a matrix |
peakPercentPresence |
peaks whose frequency of occurence in replicates below this are dropped |
lowerMassCutoff |
lower mass to retain |
upperMassCutoff |
upper mass to retain |
minSNR |
minimum SNR a peak must have to be retained |
a list containg two lists of MALDIquant peak objects "samplePeaks" and "matrixPeaks"
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