MEDIPS-package: (MeD)IP-seq data analysis
In chavez-lab/MEDIPS: DNA IP-seq data analysis
Description
Details
Author(s)
References
Description
MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq).
Nevertheless, several functionalities may be applied to other types of sequencing data (e.g. differential coverage or testing the saturation of ChIP-seq data).
MEDIPS addresses several aspects in the context of MeDIP-seq data analysis including basic data processing, several quality controls, normalization, and identification of differential coverage.
Details
Package: MEDIPS
Type: Package
License: GPL (>=2)
LazyLoad: yes
Author(s)
Lukas Chavez, Matthias Lienhard, Joern Dietrich
Maintainer: Lukas Chavez <lchavez@liai.org>
References
Chavez L, Jozefczuk J, Grimm C, Dietrich J, Timmermann B, Lehrach H, Herwig R, Adjaye J., Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage, Genome Res. 2010 Oct;20(10):1441-50. Epub 2010 Aug 27.
chavez-lab/MEDIPS documentation built on Feb. 17, 2021, 3:24 a.m.
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Description Details Author(s) References
Description
MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). Nevertheless, several functionalities may be applied to other types of sequencing data (e.g. differential coverage or testing the saturation of ChIP-seq data). MEDIPS addresses several aspects in the context of MeDIP-seq data analysis including basic data processing, several quality controls, normalization, and identification of differential coverage.
Details
| Package: | MEDIPS |
| Type: | Package |
| License: | GPL (>=2) |
| LazyLoad: | yes |
Author(s)
Lukas Chavez, Matthias Lienhard, Joern Dietrich
Maintainer: Lukas Chavez <lchavez@liai.org>
References
Chavez L, Jozefczuk J, Grimm C, Dietrich J, Timmermann B, Lehrach H, Herwig R, Adjaye J., Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage, Genome Res. 2010 Oct;20(10):1441-50. Epub 2010 Aug 27.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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