Description Usage Arguments Value Author(s) Examples
View source: R/MEDIPS.couplingVector.R
The function calculates the local densities of a defined sequence pattern (e.g. CpGs) and returns a COUPLING SET object which is necessary for normalizing MeDIP data.
1 | MEDIPS.couplingVector(pattern="CG", refObj=NULL)
|
pattern |
defines the sequence pattern, e.g. CG for CpGs. |
refObj |
a MEDIPS Set or MEDIPS ROI Set that serves as reference for the genome and window parameters. |
A COUPLING SET object.
Lukas Chavez
1 2 3 4 5 | library("MEDIPSData")
library("BSgenome.Hsapiens.UCSC.hg19")
data(hESCs_MeDIP)
CS = MEDIPS.couplingVector(pattern="CG", refObj=hESCs_MeDIP)
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