Description Usage Arguments Value Author(s) Examples
View source: R/MEDIPS.plotSaturation.R
The results of the saturation analysis will be visualized by the function.
1 | MEDIPS.plotSaturation(saturationObj = NULL, main="Saturation analysis")
|
saturationObj |
The saturation results object returned by the MEDIPS.saturationAnalysis function |
main |
The title of the coverage plot. |
The coverage plot will be visualized.
Lukas Chavez
1 2 3 4 5 6 | library(MEDIPSData)
library(BSgenome.Hsapiens.UCSC.hg19)
bam.file.hESCs.Rep1.MeDIP = system.file("extdata", "hESCs.MeDIP.Rep1.chr22.bam", package="MEDIPSData")
sr=MEDIPS.saturation(file=bam.file.hESCs.Rep1.MeDIP, BSgenome="BSgenome.Hsapiens.UCSC.hg19", uniq=1e-3, extend=250, shift=0, window_size=100, chr.select="chr22", nit=10, nrit=1, empty_bins=TRUE, rank=FALSE)
MEDIPS.plotSaturation(saturationObj = sr, main="Saturation analysis")
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