std_geno: Re-center genotype matrix

In chenchunyu88/BATools: BATools: An R package that extends 'Bayesian Alphabet' for Whole Genome Prediction and Genome-wide association study

Description

Re-center genotype matrix

Usage

std_geno(x, method = c("s", "c"), freq = NULL)

Arguments

x	genotype matrix or 'baData' object
method	the method used for centering, 'c' is centering and 's' is standardizing
freq	allele frequency of the one coded as 1, if not supplied, will use the frequency in x

Value

centered genotype matrix or 'baData' object with centered genotype matrix

Examples

## Not run: 
 data("Pig")
 #Standardize genotype matrix with the allele frequency in F0
 geno=std_geno(PigM,method="s",freq=PigAlleleFreq)

## End(Not run)

chenchunyu88/BATools documentation built on May 19, 2019, 8:21 a.m.