Files in chenhong-dkfz/tornado.test.1
Tornado Plot for CNV
.DS_Store
.Rbuildignore
.Rproj.user/9C1E1377/build_options
.Rproj.user/9C1E1377/console06/INDEX001
.Rproj.user/9C1E1377/cpp-definition-cache
.Rproj.user/9C1E1377/pcs/files-pane.pper
.Rproj.user/9C1E1377/pcs/source-pane.pper
.Rproj.user/9C1E1377/pcs/windowlayoutstate.pper
.Rproj.user/9C1E1377/pcs/workbench-pane.pper
.Rproj.user/9C1E1377/persistent-state
.Rproj.user/9C1E1377/rmd-outputs
.Rproj.user/9C1E1377/saved_source_markers
.Rproj.user/9C1E1377/sources/prop/137C883B
.Rproj.user/9C1E1377/sources/prop/1860C640
.Rproj.user/9C1E1377/sources/prop/1CF654B2
.Rproj.user/9C1E1377/sources/prop/227CA5E2
.Rproj.user/9C1E1377/sources/prop/2AB12C1D
.Rproj.user/9C1E1377/sources/prop/2B932154
.Rproj.user/9C1E1377/sources/prop/3B8DA488
.Rproj.user/9C1E1377/sources/prop/4367F8AE
.Rproj.user/9C1E1377/sources/prop/48562260
.Rproj.user/9C1E1377/sources/prop/57E9E655
.Rproj.user/9C1E1377/sources/prop/5A98D8D1
.Rproj.user/9C1E1377/sources/prop/5EA1C5B1
.Rproj.user/9C1E1377/sources/prop/61229936
.Rproj.user/9C1E1377/sources/prop/713DF91E
.Rproj.user/9C1E1377/sources/prop/723F8832
.Rproj.user/9C1E1377/sources/prop/7AF983C0
.Rproj.user/9C1E1377/sources/prop/8DE8AD49
.Rproj.user/9C1E1377/sources/prop/8F46B66E
.Rproj.user/9C1E1377/sources/prop/A29AE6B6
.Rproj.user/9C1E1377/sources/prop/BAED6B6
.Rproj.user/9C1E1377/sources/prop/CC760244
.Rproj.user/9C1E1377/sources/prop/D2663EB8
.Rproj.user/9C1E1377/sources/prop/D5349651
.Rproj.user/9C1E1377/sources/prop/DAF99155
.Rproj.user/9C1E1377/sources/prop/E026D8AB
.Rproj.user/9C1E1377/sources/prop/E183FB11
.Rproj.user/9C1E1377/sources/prop/F9FE932
.Rproj.user/9C1E1377/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
GenomeTornadoPlot.Rproj
LICENSE
NAMESPACE
R/.DS_Store
R/CNV_by_Method.R
R/CNV_single_class.R
R/CNV_twin_class.R
R/GetColor.R
R/MakeData.R
R/MapPloidyClasses.R
R/PlotCnvs_cohort.R
R/PlotTwins.R
R/PlotTwinsInit.R
R/S4_Generic_Methods.R
R/TOrnadoPlots_CNV_twin.R
R/TornadoPlots_CNV_single.R
R/dependencies.R
R/entropy.R
R/focallity_score_2.R
R/multi_panel_single.r
R/multi_panel_twin.r
R/plotCnv.R
R/plotCnv_cohort.R
R/runExample.R
README.md
Rplots.pdf
data/.DS_Store
data/CNV_STK38L.rda
data/MLLT3_CDKN2A.rda
data/cnv_KRAS.rda
data/gencode.v19.genes.rda
data/genes.rda
data/pcawg_cnv.Rdata
image/.DS_Store
image/bi_01.png
image/bi_02.png
image/bi_03.png
image/bi_04.png
image/bi_05.png
image/bi_06.png
image/example_del_dup_plot.png
image/example_mixedplot.png
image/example_tornadoplot.png
image/example_twin_plot.png
image/example_twinplot.png
image/pten_01.png
image/pten_02.png
image/pten_03.png
image/pten_04.png
image/pten_05.png
image/pten_06.png
image/pten_07.png
image/pten_multiple.png
image/shiny.png
image/stk38L_multiple.png
image/stk38L_tornado.png
image/stk38l_1.png
image/stk38l_2.png
image/stk38l_dupdel.png
image/tp53_01.png
image/tp53_02.png
image/workflow.png
inst/.DS_Store
inst/shiny-examples/.DS_Store
inst/shiny-examples/myapp/NA
inst/shiny-examples/myapp/server.R
inst/shiny-examples/myapp/t1.tiff
inst/shiny-examples/myapp/ui.R
man/CNV.by.method.Rd
man/CNV_single-class.Rd
man/MakeData.Rd
man/TornadoPlots-CNV_single-method.Rd
man/TornadoPlots-CNV_twin-method.Rd
man/reexports.Rd
man/runExample.Rd
vignettes/.gitignore
vignettes/my-vignette.Rmd
vignettes/t1.tiff
