R/dependencies.R

In chenhong-dkfz/tornado.test.1: Tornado Plot for CNV

#' @importFrom quantsmooth paintCytobands lengthChromosome
#' @export
quantsmooth::paintCytobands
#' @export
quantsmooth::lengthChromosome

#' @importFrom graphics plot legend axis boxplot lines par pie polygon text plot.new rect
#' @export
graphics::plot
#' @export
graphics::legend
#' @export
graphics::axis
#' @export
graphics::boxplot
#' @export
graphics::lines
#' @export
graphics::par
#' @export
graphics::pie
#' @export
graphics::polygon
#' @export
graphics::text
#' @export
graphics::plot.new
#' @export
graphics::rect

#' @importFrom grDevices colorRampPalette dev.off gray.colors palette pdf rainbow
#' @export
grDevices::colorRampPalette
#' @export
grDevices::dev.off
#' @export
grDevices::gray.colors
#' @export
grDevices::palette
#' @export
grDevices::pdf
#' @export
grDevices::rainbow

#' @importFrom GenomicRanges makeGRangesFromDataFrame GRanges seqnames start end
#' @export
GenomicRanges::makeGRangesFromDataFrame
#' @export
GenomicRanges::GRanges
#' @export
GenomicRanges::seqnames
#' @export
GenomicRanges::start
#' @export
GenomicRanges::end


#' @importFrom entropy entropy
#' @export
entropy::entropy


#' @importFrom gridExtra grid.arrange
#' @export
gridExtra::grid.arrange

#' @importFrom grid rasterGrob
#' @export
grid::rasterGrob


#' @importFrom tiff readTIFF
#' @export
tiff::readTIFF

#' @importFrom IRanges IRanges subsetByOverlaps
#' @export
IRanges::IRanges
#' @export
IRanges::subsetByOverlaps


#' @importFrom S4Vectors Rle
#' @export
S4Vectors::Rle

#' @importFrom data.table fread
#' @export
data.table::fread