generate_parent_nebula: generate_parent_nebula

In chi-med-pro/MCnebula: MCnebula algorithm integration in R

generate_parent_nebula

Description

According to formula dataset and structure dataset to generate parent-nebula graph

Usage

generate_parent_nebula(
  write_output = T,
  output_format = "graphml",
  output = paste0(.MCn.output, "/", .MCn.results),
  edges_file = paste0(output, "/parent_nebula/parent_nebula_edges.tsv"),
  edges_method = "method_formula_based_spec_compare",
  nodes_attributes = .MCn.formula_set,
  nodes_other_attributes = .MCn.structure_set,
  rm_parent_isolate_nodes = F,
  edge_filter = 0.5,
  cpu_cores = 8,
  ...
)

Arguments

write_output	Logic, Default: T
output_format	Character, 'igraph' supported format, Default: 'graphml'
output	Character, Default: paste0(.MCn.output, "/", .MCn.results)
edges_file	Character, path to edges file, Default: paste0(output, "/parent_nebula/parent_nebula_edges.tsv")
edges_method	Character, Default: 'method_formula_based_spec_compare'
nodes_attributes	A data.frame, formula dataset, Default: .MCn.formula_set
nodes_other_attributes	A data.frame, structure dataset, Default: .MCn.structure_set
rm_parent_isolate_nodes	Logic, Default: F
edge_filter	A number, Default: 0.5
cpu_cores	A number, thread count, Default: 8
...	...

Details

DETAILS

See Also

reexports, mutate, mutate_all, rename, filter as_data_frame, write_graph

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

chi-med-pro/MCnebula documentation built on March 28, 2023, 5:55 a.m.