initialize_mcnebula: FUNCTION_TITLE

In chi-med-pro/MCnebula: MCnebula algorithm integration in R

FUNCTION_TITLE

Description

FUNCTION_DESCRIPTION

Usage

initialize_mcnebula(
  sirius_path,
  output_path = sirius_path,
  output_file = "mcnebula_results",
  palette = unique(c((ggsci::pal_simpsons())(16), (ggsci::pal_igv("default"))(51),
    (ggsci::pal_ucscgb())(26), (ggsci::pal_d3("category20"))(20))),
  palette_stat = palette,
  palette_ppcp = palette,
  palette_label = colorRampPalette(c("#C6DBEFFF", "#3182BDFF", "red"))(10),
  rm_var = F
)

Arguments

sirius_path	PARAM_DESCRIPTION
output_path	PARAM_DESCRIPTION, Default: sirius_path
output_file	PARAM_DESCRIPTION, Default: 'mcnebula_results'
palette	PARAM_DESCRIPTION, Default: unique(c((ggsci::pal_simpsons())(16), (ggsci::pal_igv("default"))(51)))
palette_stat	PARAM_DESCRIPTION, Default: palette
palette_label	PARAM_DESCRIPTION, Default: colorRampPalette(c("#C6DBEFFF", "#3182BDFF", "red"))(10)
rm_var	PARAM_DESCRIPTION, Default: F

Details

DETAILS

Value

OUTPUT_DESCRIPTION

See Also

pal_simpsons, pal_igv

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

chi-med-pro/MCnebula documentation built on March 28, 2023, 5:55 a.m.