nebula_re_rank: FUNCTION_TITLE

In chi-med-pro/MCnebula: MCnebula algorithm integration in R

FUNCTION_TITLE

Description

FUNCTION_DESCRIPTION

Usage

nebula_re_rank(
  nebula_name,
  top_n = 50,
  match_pattern = NULL,
  collate_factor = NA,
  only_gather_structure = F,
  reference_compound = NA,
  reference_ratio = 0.5,
  cluster_method = NA,
  csi_score_weight = 0.6,
  class_similarity_weight = 0.3,
  filter_via_classification = F,
  rt_set = NA,
  rt_weight = 0.1,
  rt_window = 1.5,
  revise_MCn_formula_set = F,
  revise_MCn_structure_set = F,
  ...
)

Arguments

nebula_name	PARAM_DESCRIPTION
top_n	PARAM_DESCRIPTION, Default: 10
match_pattern	PARAM_DESCRIPTION, Default: c("precursorFormula")
collate_factor	PARAM_DESCRIPTION, Default: 0.85
revise_MCn_formula_set	PARAM_DESCRIPTION, Default: T
revise_MCn_structure_set	PARAM_DESCRIPTION, Default: T
...	PARAM_DESCRIPTION

Details

DETAILS

Value

OUTPUT_DESCRIPTION

See Also

filter, reexports, arrange, mutate, select, distinct pbapply rbindlist separate

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

chi-med-pro/MCnebula documentation built on March 28, 2023, 5:55 a.m.