getParameters: Retrieve parameters for previously used function calls and...

In chrarnold/GRaNIE: GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data

Retrieve parameters for previously used function calls and general parameters for a GRN object.

Description

Retrieve parameters for previously used function calls and general parameters for a GRN object.

Usage

getParameters(GRN, type = "parameter", name = "all")

Arguments

GRN	Object of class GRN
type	Character. Default parameter. Either function or parameter. When set to function, a valid GRaNIE function name must be given that has been run before. When set to parameter, in combination with name, returns a specific parameter (as specified in GRN@config)).
name	Character. Default all. Name of parameter or function name to retrieve. Set to the special keyword all to retrieve all parameters.

Value

The same GRN object, with added data from this function.

Examples

# See the Workflow vignette on the GRaNIE website for examples
GRN = loadExampleObject()
params.l = getParameters(GRN, type = "parameter", name = "all")

chrarnold/GRaNIE documentation built on April 28, 2022, 2:18 a.m.