overlapPeaksAndTFBS: Overlap peaks and TFBS for a 'GRN' object

In chrarnold/GRaNIE: GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data

Overlap peaks and TFBS for a GRN object

Description

Overlap peaks and TFBS for a GRN object

Usage

overlapPeaksAndTFBS(GRN, nCores = 2, forceRerun = FALSE)

Arguments

GRN	Object of class GRN
nCores	Integer >0. Default 1. Number of cores to use.
forceRerun	TRUE or FALSE. Default FALSE. Force execution, even if the GRN object already contains the result. Overwrites the old results.

Value

The same GRN object, with added data from this function.

Examples

# See the Workflow vignette on the GRaNIE website for examples
GRN = loadExampleObject()
GRN = overlapPeaksAndTFBS(GRN, nCores = 2, forceRerun = FALSE)

chrarnold/GRaNIE documentation built on April 28, 2022, 2:18 a.m.