Man pages for chrisamiller/fishplot
Visualize the evolution of populations of cells over time
| annotClone | Annotate the clones by driver mutations |
| checkCol | Check that the number of colors provided matches up with the... |
| createBackgroundImage | Create the gradient background image for the plot |
| createFishObject | Create a fish object after doing some input validation and... |
| drawClustBezier | Draw a single cluster using bezier curves |
| drawClustPolygon | Draw a single cluster using polygons |
| drawClustSpline | Draw a single cluster using splined curves |
| drawLegend | Draw a legend beneath the plot |
| fishPlot | Given a fish object containing layout information, draw the... |
| fixDisappearingClones | A clone that has a nonzero value at one time point cannot... |
| getAllNestLevels | Given the a list representing the parents of each clone,... |
| getInnerSpace | Get the percentage of a clone that is only that clone and not... |
| getNestLevel | Given the a list representing the parents of each clone, and... |
| getOuterSpace | Get the amount of non-tumor space outside of all clones |
| initFishClass | Initialize the fish class |
| layoutClones | Generate key points of the layout that will be used for... |
| numChildren | get the number of non-zero children at a particular timepoint |
| setCol | Attach the colors for plotting to the fish object, ensuring... |
| validateInputs | Validate some key assumptions about the fish object's data |
