fishPlot: Given a fish object containing layout information, draw the...

In chrisamiller/fishplot: Visualize the evolution of populations of cells over time

Given a fish object containing layout information, draw the fish plot

Description

Given a fish object containing layout information, draw the fish plot

Usage

fishPlot(
  fish,
  shape = "polygon",
  vlines = NULL,
  col.vline = "#FFFFFF99",
  vlab = NULL,
  border = 0.5,
  col.border = "#777777",
  pad.left = 0.2,
  ramp.angle = 0.5,
  title = NULL,
  title.btm = NULL,
  cex.title = NULL,
  cex.vlab = 0.7,
  bg.type = "gradient",
  bg.col = c("bisque", "darkgoldenrod1", "darkorange3")
)

Arguments

fish	A fish object that contains layout information
shape	The type of shape to construct the plot out of. The "spline" and "polygon" methods work well. "bezier" is more hit or miss
vlines	A vector of x positions at which to draw vertical lines
col.vline	A color value for the vertical lines
vlab	A character vector containing labels for each of the vertical lines
border	A numeric width for the border line around this polygon
col.border	A color for the border line
pad.left	The amount of "ramp-up" to the left of the first timepoint. Given as a fraction of the total plot width. Default 0.2
ramp.angle	A numeric value between 0 and 1 that indicates how steeply the shape should expand from it's leftmost origin to the first measured point. Only used when shape="polygon".
title	A string for the title above the plot
title.btm	A string for the title at the bottom left, internal to the plot
cex.title	A numeric value for scaling the title size
cex.vlab	A numeric value for scaling the top label size default is 0.7
bg.type	A string giving the background type - either "gradient" (default) or "solid". Default is "gradient".
bg.col	A string or vector of strings giving the background color. For type "solid", one color expected. For type "gradient", a vector of three colors is expected.

Value

No return value, outputs on graphics device

Examples

## Not run: 
fishPlot(fish,shape="polygon",title.btm="633734",
           vlines=c(0,150), vlab=c("day 0","day 150"), cex.title=0.5)

## End(Not run)

chrisamiller/fishplot documentation built on Sept. 15, 2023, 1:53 p.m.