fixDisappearingClones: A clone that has a nonzero value at one time point cannot...
In chrisamiller/fishplot: Visualize the evolution of populations of cells over time
fixDisappearingClones R Documentation
A clone that has a nonzero value at one time point cannot completely disappear in a second, and then reappear in a third.
That clone must have really been there all along. This function will "fix" any such instances by replacing the in-between
zero values with a very small value.
Description
A clone that has a nonzero value at one time point cannot completely disappear in a second, and then reappear in a third.
That clone must have really been there all along. This function will "fix" any such instances by replacing the in-between
zero values with a very small value.
Usage
fixDisappearingClones(frac.table, nest.level)
Arguments
frac.table
A numeric matrix containing tumor fraction estimates for all clones at all timepoints
nest.level
An integer vector specifying how deeply a given clone is nested in the overall hierarchy
Value
The matrix with appropriate zeros converted to appropriate small values
Examples
## Not run:
frac.table = fixDisappearingClones(frac.table, nest.level)
## End(Not run)
chrisamiller/fishplot documentation built on Sept. 15, 2023, 1:53 p.m.
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| fixDisappearingClones | R Documentation |
A clone that has a nonzero value at one time point cannot completely disappear in a second, and then reappear in a third. That clone must have really been there all along. This function will "fix" any such instances by replacing the in-between zero values with a very small value.
Description
A clone that has a nonzero value at one time point cannot completely disappear in a second, and then reappear in a third. That clone must have really been there all along. This function will "fix" any such instances by replacing the in-between zero values with a very small value.
Usage
fixDisappearingClones(frac.table, nest.level)
Arguments
frac.table |
A numeric matrix containing tumor fraction estimates for all clones at all timepoints |
nest.level |
An integer vector specifying how deeply a given clone is nested in the overall hierarchy |
Value
The matrix with appropriate zeros converted to appropriate small values
Examples
## Not run:
frac.table = fixDisappearingClones(frac.table, nest.level)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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