chrisamiller/readDepth
Find regions of genomic copy number loss and gain from short reads

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Functions
110
Source code
8
Man pages
17
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chrisamiller/readDepth: Find regions of genomic copy number loss and gain from short reads
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API

API for chrisamiller/readDepth
Find regions of genomic copy number loss and gain from short reads

Global functions
.onLoad Source code
addMapability Man page Source code
balancedCenter Man page Source code
bedAnnotationLength Man page Source code
binGC Man page Source code
binParams Man page Source code
binReads Man page Source code
breakPointInt Man page Source code
calcWindParams Man page Source code
chrName Man page Source code
combineBins Man page Source code
combineGC Man page Source code
dividePeaks Man page Source code
doBinning Man page Source code
doCorrection Man page Source code
doMapCorrect Man page Source code
fdrRate Man page Source code
getAlts Man page Source code
getAnnotations Man page Source code
getChrLength Man page Source code
getChrPloidy Man page Source code
getNumReads Man page Source code
getReadInfo Man page Source code
getSegs Man page Source code
initRdClass Man page Source code
listify Man page Source code
loessCorrect Man page Source code
logScore Man page Source code
makeGcCorrBins Man page Source code
makedf Man page Source code
mergeSegs Man page Source code
methAdjust Man page Source code
ploidyPercentages Man page Source code
plotDist Man page Source code
plotLoess Man page Source code
plotOverlappingHist Man page Source code
plotSegs Man page Source code
plotWindows Man page Source code
rd.cnSegments Man page Source code
rd.gcCorrect Man page Source code
rd.mapCorrect Man page Source code
rd.matchBreakpoints Man page Source code
rdObject-class Man page
readDepth Man page Source code
readEntrypoints Man page Source code
readParameters Man page Source code
replaceNAsWZeros Man page Source code
returnOutliers Man page Source code
rpois.od Man page
stripOutliers Man page Source code
trim Man page
trimSegmentEnds Man page Source code
tripDist Man page Source code
verifyFiles Man page Source code
writeAlts Man page Source code
writeSegs Man page Source code
writeThresholds Man page Source code
chrisamiller/readDepth documentation built on June 16, 2021, 2:05 p.m.

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