readDepth-package: What the package does (short line)

In chrisamiller/readDepth: Find regions of genomic copy number loss and gain from short reads

Description

Utilizes multi-core systems with the help of the foreach and doMC packages, degrades gracefully to single core systems.

Details

Package:	readDepth
Type:	Package
Version:	1.0
Date:	2010-05-12
License:	MIT
LazyLoad:	yes

~~ An overview of how to use the package, including the most important ~~ ~~ functions ~~

Author(s)

Chris Miller

Maintainer: Chris Miller <[e-mail]>

References

TBA

Examples

  ##create a rdObject, set bin params
  # x <- new("rdObject")

  ##fill the bins with reads
  # x.reads <- readDepth(x)

  ##do mapability correction
  # x.mapCorr <- rd.mapCorr(x.reads)

  ##do gc correction on the read counts
  # x.gcCorr <- rd.gcCorrect(x.mapCorr)

  ##return regions of CN gain and loss
  # segs <- rd.cnSegment(x.gcCorr)

chrisamiller/readDepth documentation built on June 16, 2021, 2:05 p.m.