Description Usage Arguments Value See Also Examples
quick and dirty way of visualizing copy-number segments on a single chromosome
1 | plotSegs(rdo,segs,chr)
|
rdo |
a readDepth object created with new("rdObject") |
segs |
a data frame that is the result of calling rd.cnSegments |
chr |
the name of the chromosome to plot |
a plot with position on the X-axis and segments of CN on the Y axes
'rd.cnSegments'
1 2 3 4 5 | ##get regions of CN gain and loss
# segs <- rd.cnSegments(x)
##extract just the gains and losses
# plotSegs(x, segs, "chr22")
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