Man pages for chrisamiller/readDepth
Find regions of genomic copy number loss and gain from short reads
| functions | readDepth Functions |
| getAlts | getAlts |
| getAnnotations | getAnnotations |
| mergeSegs | mergeSegs |
| plotDist | plotDist |
| plotSegs | plotSegs |
| rd.cnSegments | Identifies regions of copy-number alteration |
| rd.gcCorrect | readDepth: GC-content correction |
| rd.mapCorrect | Correct read depth for unmappable regions |
| rd.matchBreakpoints | refine edges of CNAs by matching them with nearby breakpoints |
| rdObject-class | Class "rdObject" ~~~ |
| readDepth | readDepth |
| readDepth-package | What the package does (short line) |
| trimSegmentEnds | trimSegmentEnds |
| writeAlts | writeAlts |
| writeSegs | writeSegs |
| writeThresholds | writeThresholds |
