mcmc_hpv: MCMC procedure for ecological study of HPV and cervical...

In christianu7/aistats2020smi: Semi-Modular Inference

Description

MCMC sampling for the ecological study of HPV and cervical cancer.

Usage

mcmc_hpv(
  HPV,
  hpv_model_whole_stan,
  hpv_model_poisson_stan,
  eta_pois = 1,
  eta_binom = 1,
  n_iter = 10000,
  n_warmup = 1000,
  n_chains_mcmc = 4,
  n_iter_sub = 200,
  out_file_rda = NULL,
  n_cores = 1
)

Arguments

HPV	Data frame. Data for correlation between human papillomavirus (HPV) prevalence and cervical cancer incidence.
hpv_model_whole_stan	stanmodel. The compiled stan model with the powered version of the HPV model.
hpv_model_poisson_stan	stanmodel. The compiled stan model with the poisson module of the HPV model.
eta_pois	Float. Degree of influence of the poisson module.
eta_binom	Float. Degree of influence of the poisson module.
n_iter	Integer. Number of iterations in the main MCMC chain.
n_warmup	Integer. Number of updates discarded when "warming-up" the MCMC.
n_chains_mcmc	Integer. Number of parallel chains produced by the sampler
n_iter_sub	Integer. Number of updates in the subchain of the two-stage MCMC
out_file_rda	Indicates a file (.rda) where the output should be saved
n_cores	Number of cores used by stan in the sampling process.

christianu7/aistats2020smi documentation built on March 7, 2021, 2:40 p.m.